IL_1VY6_342
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_342 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.077
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
1VY6|1|AA|G|673
1VY6|1|AA|G|674
1VY6|1|AA|A|675
1VY6|1|AA|A|676
1VY6|1|AA|U|677
*
1VY6|1|AA|G|713
1VY6|1|AA|G|714
1VY6|1|AA|A|715
1VY6|1|AA|A|716
1VY6|1|AA|C|717
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AR
- 30S ribosomal protein S18
- Chain BD
- 50S ribosomal protein L2
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