IL_1VY6_352

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

1VY6|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_352 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1075

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1VY6|1|DA|C|844
1VY6|1|DA|G|845
1VY6|1|DA|C|846
1VY6|1|DA|U|847
1VY6|1|DA|G|848
1VY6|1|DA|A|849
1VY6|1|DA|C|850
*
1VY6|1|DA|G|927
1VY6|1|DA|G|928
1VY6|1|DA|U|930
1VY6|1|DA|G|931
1VY6|1|DA|G|932
1VY6|1|DA|A|933
1VY6|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15

Chain D3

50S ribosomal protein L30