IL_1VY6_353
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_353 not in the Motif Atlas
- Homologous match to IL_9DFE_026
- Geometric discrepancy: 0.1106
- The information below is about IL_9DFE_026
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VY6|1|DA|U|858
1VY6|1|DA|G|859
1VY6|1|DA|U|860
1VY6|1|DA|A|861
1VY6|1|DA|G|862
*
1VY6|1|DA|C|915
1VY6|1|DA|G|916
1VY6|1|DA|A|917
1VY6|1|DA|A|918
1VY6|1|DA|G|919
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain D3
- 50S ribosomal protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L16
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