IL_1VY7_001

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

1VY7|1|AA|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_001 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.1353

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

1VY7|1|AA|U|30
1VY7|1|AA|G|31
1VY7|1|AA|A|32
*
1VY7|1|AA|U|552
1VY7|1|AA|A|553

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12