IL_1VY7_019

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_019 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1455

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

1VY7|1|AA|G|450
1VY7|1|AA|A|451
1VY7|1|AA|A|452
1VY7|1|AA|A|453
1VY7|1|AA|C|454
1VY7|1|AA|C|455
1VY7|1|AA|C|456
*
1VY7|1|AA|G|475
1VY7|1|AA|G|476
1VY7|1|AA|A|477
1VY7|1|AA|C|479
1VY7|1|AA|U|480
1VY7|1|AA|G|481
1VY7|1|AA|A|482
1VY7|1|AA|C|483

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16