IL_1VY7_025
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GAUAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_025 not in the Motif Atlas
- Geometric match to IL_6CK5_002
- Geometric discrepancy: 0.3412
- The information below is about IL_6CK5_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_70784.1
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
1VY7|1|AA|G|597
1VY7|1|AA|U|598
1VY7|1|AA|C|599
*
1VY7|1|AA|G|639
1VY7|1|AA|A|640
1VY7|1|AA|U|641
1VY7|1|AA|A|642
1VY7|1|AA|C|643
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AH
- 30S ribosomal protein S8
- Chain AQ
- 30S ribosomal protein S17
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