IL_1VY7_086
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_086 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.103
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VY7|1|BA|C|857
1VY7|1|BA|U|858
1VY7|1|BA|G|859
1VY7|1|BA|U|860
1VY7|1|BA|A|861
1VY7|1|BA|G|862
*
1VY7|1|BA|C|915
1VY7|1|BA|G|916
1VY7|1|BA|A|917
1VY7|1|BA|A|918
1VY7|1|BA|G|919
1VY7|1|BA|G|920
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain B3
- 50S ribosomal protein L30
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BQ
- 50S ribosomal protein L16
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