IL_1VY7_091

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAGGGG*CUACCA

Length

12 nucleotides

Bulged bases

1VY7|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_091 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.59

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

1VY7|1|BA|U|877
1VY7|1|BA|A|878
1VY7|1|BA|G|879
1VY7|1|BA|G|880
1VY7|1|BA|G|881
1VY7|1|BA|G|882
*
1VY7|1|BA|C|894
1VY7|1|BA|U|895
1VY7|1|BA|A|896
1VY7|1|BA|C|897
1VY7|1|BA|C|898
1VY7|1|BA|A|899

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25