IL_1VY7_186

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

1VY7|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_186 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.1349

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1VY7|1|CA|G|409
1VY7|1|CA|G|410
1VY7|1|CA|A|411
1VY7|1|CA|A|412
1VY7|1|CA|G|413
1VY7|1|CA|A|414
1VY7|1|CA|A|415
1VY7|1|CA|G|416
1VY7|1|CA|C|417
*
1VY7|1|CA|G|426
1VY7|1|CA|U|427
1VY7|1|CA|G|428
1VY7|1|CA|U|429
1VY7|1|CA|A|430
1VY7|1|CA|A|431
1VY7|1|CA|A|432
1VY7|1|CA|C|433

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4