IL_1VY7_265
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 1VY7|1|DA|U|1142, 1VY7|1|DA|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_265 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.099
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
1VY7|1|DA|C|1018
1VY7|1|DA|U|1019
1VY7|1|DA|A|1020
1VY7|1|DA|A|1021
1VY7|1|DA|G|1022
1VY7|1|DA|U|1023
1VY7|1|DA|G|1024
*
1VY7|1|DA|C|1140
1VY7|1|DA|U|1141
1VY7|1|DA|U|1142
1VY7|1|DA|A|1142|||A
1VY7|1|DA|A|1143
1VY7|1|DA|G|1144
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D9
- 50S ribosomal protein L36
- Chain DN
- 50S ribosomal protein L13
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