IL_1VY7_291

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

1VY7|1|DA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_291 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.123

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1VY7|1|DA|C|1686
1VY7|1|DA|G|1687
1VY7|1|DA|U|1688
1VY7|1|DA|A|1689
1VY7|1|DA|A|1690
1VY7|1|DA|C|1691
*
1VY7|1|DA|G|1696
1VY7|1|DA|G|1697
1VY7|1|DA|A|1698
1VY7|1|DA|G|1699
1VY7|1|DA|A|1700
1VY7|1|DA|A|1701
1VY7|1|DA|G|1702

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2