IL_1VY7_314

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_314 not in the Motif Atlas

Homologous match to IL_7RQB_091

Geometric discrepancy: 0.0852

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

1VY7|1|DA|A|2453
1VY7|1|DA|G|2454
*
1VY7|1|DA|C|2498
1VY7|1|DA|C|2499
1VY7|1|DA|U|2500

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CW

Cytidine-Puromycin

Chain D0

50S ribosomal protein L27

Chain DE

50S ribosomal protein L3