IL_1VY7_317
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 1VY7|1|DA|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_317 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.0706
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
1VY7|1|DA|A|2459
1VY7|1|DA|U|2460
1VY7|1|DA|C|2461
*
1VY7|1|DA|G|2489
1VY7|1|DA|G|2490
1VY7|1|DA|U|2491
1VY7|1|DA|U|2492
1VY7|1|DA|U|2493
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CW
- Cytidine-Puromycin
- Chain D0
- 50S ribosomal protein L27
- Chain DQ
- 50S ribosomal protein L16
Coloring options: