IL_1VY7_328

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_328 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.0726

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

1VY7|1|DA|C|2695
1VY7|1|DA|U|2696
*
1VY7|1|DA|A|2711
1VY7|1|DA|U|2712
1VY7|1|DA|A|2712|||A
1VY7|1|DA|A|2713
1VY7|1|DA|G|2714

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19