IL_1VY7_335

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACCC*GGAAGUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|DB|C|28
1VY7|1|DB|A|29
1VY7|1|DB|C|30
1VY7|1|DB|C|31
1VY7|1|DB|C|32
*
1VY7|1|DB|G|50
1VY7|1|DB|G|51
1VY7|1|DB|A|52
1VY7|1|DB|A|53
1VY7|1|DB|G|54
1VY7|1|DB|U|55
1VY7|1|DB|G|56

Current chains

Chain DB

5S Ribosomal RNA

Nearby chains

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18