IL_1VY7_345

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUAC

Length

33 nucleotides

Bulged bases

1VY7|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|BA|G|2124
1VY7|1|BA|G|2125
1VY7|1|BA|A|2126
1VY7|1|BA|G|2127
1VY7|1|BA|C|2128
1VY7|1|BA|C|2129
1VY7|1|BA|U|2130
1VY7|1|BA|G|2131
1VY7|1|BA|U|2132
1VY7|1|BA|G|2133
1VY7|1|BA|A|2134
1VY7|1|BA|A|2135
1VY7|1|BA|C|2136
*
1VY7|1|BA|G|2155
1VY7|1|BA|G|2156
1VY7|1|BA|G|2157
1VY7|1|BA|A|2158
1VY7|1|BA|G|2159
1VY7|1|BA|G|2160
1VY7|1|BA|C|2161
1VY7|1|BA|G|2162
1VY7|1|BA|C|2163
1VY7|1|BA|C|2164
1VY7|1|BA|G|2165
1VY7|1|BA|G|2166
1VY7|1|BA|U|2167
1VY7|1|BA|G|2168
1VY7|1|BA|A|2169
1VY7|1|BA|A|2170
1VY7|1|BA|A|2171
1VY7|1|BA|U|2172
1VY7|1|BA|A|2173
1VY7|1|BA|C|2174

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains