IL_1VY7_352

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAGC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_352 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3667

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1VY7|1|CA|C|1128
1VY7|1|CA|C|1129
1VY7|1|CA|A|1130
1VY7|1|CA|G|1131
1VY7|1|CA|C|1132
*
1VY7|1|CA|G|1142
1VY7|1|CA|G|1143
1VY7|1|CA|G|1144

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S ribosomal protein S9