IL_1VY7_353

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGACACCGAAU*AUAGGUG

Length

19 nucleotides

Bulged bases

1VY7|1|DA|C|277, 1VY7|1|DA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|DA|C|272|||J
1VY7|1|DA|G|274
1VY7|1|DA|G|275
1VY7|1|DA|A|276
1VY7|1|DA|C|277
1VY7|1|DA|A|278
1VY7|1|DA|C|279
1VY7|1|DA|C|280
1VY7|1|DA|G|281
1VY7|1|DA|A|282
1VY7|1|DA|A|283
1VY7|1|DA|U|284
*
1VY7|1|DA|A|357
1VY7|1|DA|U|358
1VY7|1|DA|A|359
1VY7|1|DA|G|360
1VY7|1|DA|G|361
1VY7|1|DA|U|362
1VY7|1|DA|G|363

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains