IL_1VY7_355

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_355 not in the Motif Atlas

Homologous match to IL_9DFE_029

Geometric discrepancy: 0.14

The information below is about IL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

1VY7|1|DA|A|870
1VY7|1|DA|U|871
1VY7|1|DA|A|872
*
1VY7|1|DA|U|905
1VY7|1|DA|G|906
1VY7|1|DA|U|907

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25