IL_1W2B_013

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0611

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1W2B|1|0|C|290
1W2B|1|0|C|291
1W2B|1|0|G|292
1W2B|1|0|A|293
1W2B|1|0|C|294
1W2B|1|0|C|295
1W2B|1|0|G|296
*
1W2B|1|0|C|355
1W2B|1|0|C|356
1W2B|1|0|A|357
1W2B|1|0|G|358
1W2B|1|0|U|359
1W2B|1|0|A|360
1W2B|1|0|C|361
1W2B|1|0|G|362

Current chains

Chain 0

23S RRNA

Nearby chains