IL_1W2B_019

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_019 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.0711

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1W2B|1|0|A|562
1W2B|1|0|C|563
1W2B|1|0|G|564
1W2B|1|0|A|565
1W2B|1|0|A|566
1W2B|1|0|U|567
*
1W2B|1|0|A|591
1W2B|1|0|G|592
1W2B|1|0|A|593
1W2B|1|0|C|594
1W2B|1|0|U|595

Current chains

Chain 0

23S RRNA

Nearby chains

Chain V

50S RIBOSOMAL PROTEIN L30P

Chain X

50S RIBOSOMAL PROTEIN L32E