IL_1W2B_020

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_020 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0871

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1W2B|1|0|U|567
1W2B|1|0|G|568
1W2B|1|0|A|569
1W2B|1|0|C|570
1W2B|1|0|C|571
1W2B|1|0|G|572
*
1W2B|1|0|C|585
1W2B|1|0|C|586
1W2B|1|0|A|587
1W2B|1|0|G|588
1W2B|1|0|U|589
1W2B|1|0|A|590
1W2B|1|0|A|591

Current chains

Chain 0

23S RRNA

Nearby chains

Chain V

50S RIBOSOMAL PROTEIN L30P