IL_1W2B_034
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1W2B_034 not in the Motif Atlas
- Homologous match to IL_4V9F_033
- Geometric discrepancy: 0.0849
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1W2B|1|0|G|952
1W2B|1|0|G|953
1W2B|1|0|U|954
1W2B|1|0|A|955
1W2B|1|0|G|956
*
1W2B|1|0|C|1011
1W2B|1|0|A|1012
1W2B|1|0|A|1013
1W2B|1|0|A|1014
1W2B|1|0|C|1015
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain M
- 50S RIBOSOMAL PROTEIN L18P
- Chain P
- 50S RIBOSOMAL PROTEIN L21E
- Chain V
- 50S RIBOSOMAL PROTEIN L30P
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