IL_1W2B_049

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_049 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.0628

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1W2B|1|0|A|1367
1W2B|1|0|U|1368
1W2B|1|0|A|1369
1W2B|1|0|G|1370
1W2B|1|0|U|1371
1W2B|1|0|A|1372
1W2B|1|0|G|1373
*
1W2B|1|0|U|2052
1W2B|1|0|G|2053
1W2B|1|0|A|2054
1W2B|1|0|A|2055
1W2B|1|0|C|2056
1W2B|1|0|U|2057

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4P

Chain Q

50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22