IL_1W2B_054

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_054 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1414

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1W2B|1|0|C|1521
1W2B|1|0|A|1522
1W2B|1|0|G|1523
1W2B|1|0|U|1524
1W2B|1|0|G|1525
1W2B|1|0|A|1526
1W2B|1|0|A|1527
1W2B|1|0|A|1528
1W2B|1|0|G|1529
*
1W2B|1|0|C|1662
1W2B|1|0|G|1663
1W2B|1|0|A|1664
1W2B|1|0|G|1665

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P