IL_1W2B_065

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1W2B|1|0|A|1857, 1W2B|1|0|C|1872, 1W2B|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0745

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1W2B|1|0|C|1854
1W2B|1|0|G|1855
1W2B|1|0|C|1856
1W2B|1|0|A|1857
1W2B|1|0|A|1858
1W2B|1|0|A|1859
1W2B|1|0|U|1860
*
1W2B|1|0|A|1869
1W2B|1|0|C|1870
1W2B|1|0|U|1871
1W2B|1|0|C|1872
1W2B|1|0|G|1873
1W2B|1|0|U|1874
1W2B|1|0|A|1875
1W2B|1|0|C|1876
1W2B|1|0|G|1877

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain Y

50S RIBOSOMAL PROTEIN L37AE