IL_1W2B_076

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

1W2B|1|0|G|2271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_076 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.1142

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

1W2B|1|0|C|2122
1W2B|1|0|A|2123
1W2B|1|0|G|2124
*
1W2B|1|0|C|2269
1W2B|1|0|G|2270
1W2B|1|0|G|2271
1W2B|1|0|G|2272

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain L

50S RIBOSOMAL PROTEIN L15E