IL_1W2B_091

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_091 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.0747

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1W2B|1|0|A|2689
1W2B|1|0|U|2690
1W2B|1|0|A|2691
1W2B|1|0|G|2692
1W2B|1|0|U|2693
1W2B|1|0|A|2694
1W2B|1|0|C|2695
*
1W2B|1|0|G|2700
1W2B|1|0|G|2701
1W2B|1|0|A|2702
1W2B|1|0|A|2703
1W2B|1|0|C|2704
1W2B|1|0|U|2705

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain E

50S RIBOSOMAL PROTEIN L6P

Chain J

50S RIBOSOMAL PROTEIN L14P