IL_1W2B_092

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCACU*ACG

Length

8 nucleotides

Bulged bases

1W2B|1|0|C|2762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_092 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.1082

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

1W2B|1|0|C|2717
1W2B|1|0|C|2718
1W2B|1|0|A|2719
1W2B|1|0|C|2720
1W2B|1|0|U|2721
*
1W2B|1|0|A|2761
1W2B|1|0|C|2762
1W2B|1|0|G|2763

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain J

50S RIBOSOMAL PROTEIN L14P

Chain T

50S RIBOSOMAL PROTEIN L24P