IL_1W2B_098

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

1W2B|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_098 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.1052

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1W2B|1|0|U|2864
1W2B|1|0|G|2865
1W2B|1|0|U|2866
1W2B|1|0|G|2867
1W2B|1|0|C|2868
1W2B|1|0|G|2869
*
1W2B|1|0|U|2888
1W2B|1|0|U|2889
1W2B|1|0|A|2890
1W2B|1|0|A|2891
1W2B|1|0|G|2892

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain T

50S RIBOSOMAL PROTEIN L24P