IL_1WNE_001

3D structure

PDB id

1WNE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with a template-primer RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

1WNE|1|B|G|906
1WNE|1|B|G|907
1WNE|1|B|C|908
*
1WNE|1|C|G|917
1WNE|1|C|C|918
1WNE|1|C|C|919

Current chains

Chain B

5'-R(*CP*AP*UP*GP*GP*GP*CP*C)-3'

Chain C

5'-R(*GP*GP*CP*CP*C)-3'

Nearby chains

Chain A

RNA-dependent RNA polymerase