IL_1X8W_011

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAAG*UAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1X8W_011 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3129

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1X8W|1|B|G|112
1X8W|1|B|A|113
1X8W|1|B|A|114
1X8W|1|B|A|115
1X8W|1|B|G|116
*
1X8W|1|B|U|205
1X8W|1|B|A|206
1X8W|1|B|A|207
1X8W|1|B|C|208

Current chains

Chain B

Tetrahymena ribozyme RNA

Nearby chains