IL_1X8W_020

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GG*CGC

Length

5 nucleotides

Bulged bases

1X8W|1|C|G|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1X8W_020 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.2864

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

1X8W|1|C|G|110
1X8W|1|C|G|111
*
1X8W|1|C|C|209
1X8W|1|C|G|210
1X8W|1|C|C|211

Current chains

Chain C

Tetrahymena ribozyme RNA

Nearby chains