IL_1X8W_035

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAAG*UGCAG

Length

10 nucleotides

Bulged bases

1X8W|1|D|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1X8W_035 not in the Motif Atlas

Geometric match to IL_7RQB_060

Geometric discrepancy: 0.3263

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1X8W|1|D|C|216
1X8W|1|D|C|217
1X8W|1|D|A|218
1X8W|1|D|A|219
1X8W|1|D|G|220
*
1X8W|1|D|U|253
1X8W|1|D|G|254
1X8W|1|D|C|255
1X8W|1|D|A|256
1X8W|1|D|G|257

Current chains

Chain D

Tetrahymena ribozyme RNA

Nearby chains

Chain A

Tetrahymena ribozyme RNA