IL_1XJR_001

3D structure

PDB id

1XJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGAG*CAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

1XJR|1|A|C|9
1XJR|1|A|C|10
1XJR|1|A|G|11
1XJR|1|A|A|12
1XJR|1|A|G|13
*
1XJR|1|A|C|39
1XJR|1|A|A|40
1XJR|1|A|G|41

Current chains

Chain A

s2m RNA

Nearby chains