Motif IL_24466.1 Version IL_24466.1 of this group appears in releases 4.7 to 4.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-7 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9NLN_005 | 9NLN | 0.5273 | 1 | C | RNA (CVB3 IRES Domain V) | G | 18 | C | 19 | A | 21 | A | 22 | U | 23 | * | A | 91 | A | 92 | C | 93 | cWW | ncWW | cWW | |||||
| 2 | IL_1XJR_001 | 1XJR | 0.5197 | 0 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | G | 11 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW | |||||
| 3 | IL_4GXY_009 | 4GXY | 0.5940 | 0 | Major groove minor groove platform with extra cWW | A | Cobalamin riboswitch | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | * | C | 105 | A | 106 | C | 107 | cWW | ntSH | ntHS | cWW | |||
| 4 | IL_4WF9_012 | 4WF9 | 0.4508 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWS | ncWW | |||
| 5 | IL_9NLN_006 | 9NLN | 0.3961 | 0 | C | RNA (CVB3 IRES Domain V) | C | 25 | U | 26 | A | 27 | A | 28 | C | 29 | * | G | 87 | C | 88 | G | 89 | cWW | ncWW | cWW | |||||
| 6 | IL_2OEU_001 | 2OEU | 0.0000 | 0 | B+A | RNA (20-mer) | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | cWW | |||||
| 7 | IL_9DID_003 | 9DID | 0.4003 | 0 | B | frameshifting pseudoknot RNA | G | 9 | U | 10 | U | 11 | C | 12 | U | 13 | * | A | 76 | C | 77 | C | 78 | cWW | cWW | cWW | |||||
| 8 | IL_9NLN_001 | 9NLN | 0.5408 | 0 | C | RNA (CVB3 IRES Domain V) | G | 106 | U | 107 | G | 108 | U | 109 | C | 110 | * | G | 5 | C | 6 | C | 7 | ncWW | ncWW | cWW | |||||
| 9 | IL_7D81_002 | 7D81 | 0.6723 | 0 | A | nadA RNA | G | 33 | G | 34 | U | 35 | G | 36 | G | 37 | * | C | 22 | G | 23 | C | 24 | cWW | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUAAU*AAC | 1 |
| CCGAG*CAG | 1 |
| GGAAG*CAC | 1 |
| GGAUC*GAC | 1 |
| CUAAC*GCG | 1 |
| CCAAU*AUG | 1 |
| GUUCU*ACC | 1 |
| GUGUC*GCC | 1 |
| GGUGG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 1 |
| CGA*A | 1 |
| GAA*A | 1 |
| GAU*A | 1 |
| UAA*C | 1 |
| CAA*U | 1 |
| UUC*C | 1 |
| UGU*C | 1 |
| GUG*G | 1 |
- Annotations
-
- (6)
- Major groove minor groove platform with extra cWW (2)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.33 | Avg 0.54 | Max 0.91
Coloring options: