IL_1XMO_039

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_039 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.245

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

1XMO|1|A|C|999
1XMO|1|A|U|1000
1XMO|1|A|A|1001
*
1XMO|1|A|U|1040
1XMO|1|A|A|1041
1XMO|1|A|G|1042

Current chains

Chain A

16S ribosomal RNA

Nearby chains