IL_1XMO_040

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_040 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.3246

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1XMO|1|A|C|1007
1XMO|1|A|C|1008
1XMO|1|A|G|1009
1XMO|1|A|G|1010
*
1XMO|1|A|C|1019
1XMO|1|A|U|1020
1XMO|1|A|G|1021
1XMO|1|A|G|1022

Current chains

Chain A

16S ribosomal RNA

Nearby chains