IL_1XMO_048

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1XMO|1|A|U|1257, 1XMO|1|A|U|1278, 1XMO|1|A|A|1280, 1XMO|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_048 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.174

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1XMO|1|A|G|1255
1XMO|1|A|A|1256
1XMO|1|A|U|1257
1XMO|1|A|G|1258
*
1XMO|1|A|C|1277
1XMO|1|A|U|1278
1XMO|1|A|A|1279
1XMO|1|A|A|1280
1XMO|1|A|U|1281
1XMO|1|A|C|1282

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14