IL_1XMQ_011

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_011 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1905

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

1XMQ|1|A|G|189
1XMQ|1|A|C|190
1XMQ|1|A|C|190|||A
*
1XMQ|1|A|G|190|||H
1XMQ|1|A|G|190|||I
1XMQ|1|A|U|190|||J

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S Ribosomal Protein S20