IL_1XMQ_016

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_016 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1036

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

1XMQ|1|A|G|371
1XMQ|1|A|C|372
1XMQ|1|A|A|373
1XMQ|1|A|A|374
1XMQ|1|A|U|375
*
1XMQ|1|A|A|389
1XMQ|1|A|C|390

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S Ribosomal Protein S16