IL_1XMQ_019

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0858

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1XMQ|1|A|G|450
1XMQ|1|A|A|451
1XMQ|1|A|A|452
1XMQ|1|A|A|453
1XMQ|1|A|C|454
1XMQ|1|A|C|455
*
1XMQ|1|A|G|477
1XMQ|1|A|A|478
1XMQ|1|A|C|479
1XMQ|1|A|U|480
1XMQ|1|A|G|481
1XMQ|1|A|A|482
1XMQ|1|A|C|483

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S Ribosomal Protein S16