IL_1XMQ_049

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

1XMQ|1|A|C|1400, 1XMQ|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_049 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1896

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

1XMQ|1|A|C|1399
1XMQ|1|A|C|1400
1XMQ|1|A|G|1401
*
1XMQ|1|A|C|1501
1XMQ|1|A|A|1502
1XMQ|1|A|A|1503
1XMQ|1|A|G|1504

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain W

A-Site Messenger RNA