IL_1XMQ_050

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_050 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1149

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1XMQ|1|A|G|1401
1XMQ|1|A|C|1402
1XMQ|1|A|C|1403
1XMQ|1|A|C|1404
*
1XMQ|1|A|G|1497
1XMQ|1|A|U|1498
1XMQ|1|A|A|1499
1XMQ|1|A|A|1500
1XMQ|1|A|C|1501

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain W

A-Site Messenger RNA