IL_1XNQ_032

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_032 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0431

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1XNQ|1|A|C|779
1XNQ|1|A|A|780
1XNQ|1|A|A|781
1XNQ|1|A|A|782
1XNQ|1|A|C|783
*
1XNQ|1|A|G|799
1XNQ|1|A|G|800
1XNQ|1|A|U|801
1XNQ|1|A|A|802
1XNQ|1|A|G|803

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein S11