IL_1XNQ_036

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

1XNQ|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_036 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.094

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1XNQ|1|A|G|933
1XNQ|1|A|C|934
1XNQ|1|A|A|935
*
1XNQ|1|A|U|1380
1XNQ|1|A|U|1381
1XNQ|1|A|C|1382
1XNQ|1|A|C|1383
1XNQ|1|A|C|1384

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S7

Chain I

Ribosomal protein S9