IL_1XNQ_042

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

1XNQ|1|A|C|1200, 1XNQ|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_042 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1044

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1XNQ|1|A|G|1057
1XNQ|1|A|G|1058
*
1XNQ|1|A|U|1199
1XNQ|1|A|C|1200
1XNQ|1|A|A|1201
1XNQ|1|A|G|1202
1XNQ|1|A|C|1203

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein S3

Chain J

Ribosomal protein S10

Chain N

Ribosomal protein S14