IL_41261.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_3RW6_003	3RW6	0.5576	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	38	A	40	U	41	*	A	20	G	21		cWW	tHS	cWW
2	IL_8GLP_033	8GLP	0.3060	1		L5	LSU rRNA	U	512	U	514	C	515	*	G	646	G	647		cWW	tHS	cWW
3	IL_9H3G_142	9H3G	0.4630	1		A	LSU rRNA	U	3368	U	3370	G	3371	*	C	3311	G	3312		cWW	tHS	cWW
4	IL_8B0X_047	8B0X	0.4387	2	Minor groove platform (H)	A	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
5	IL_4LFB_045	4LFB	0.4203	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
6	IL_9PN5_208	9PN5	0.5460	2		B5	SSU rRNA	U	1430	G	1433	U	1434	*	G	1277	G	1278		cWW	tHS	cWWa
7	IL_8GLP_017	8GLP	0.4396	1		L5+L8	LSU rRNA + 5.8S rRNA	C	339	G	341	G	342	*	C	32	G	33		cWW		cWW
8	IL_9DFE_073	9DFE	0.4423	1	Minor groove platform	1A	LSU rRNA	G	1846	A	1848	G	1849	*	C	1893	C	1894		cWW	ncWS	cWW
9	IL_9DFE_031	9DFE	0.3524	0	Minor groove platform	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW
10	IL_9PN5_211	9PN5	0.1200	0		B5	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
11	IL_9H3G_224	9H3G	0.1106	0		h1	SSU rRNA	C	1307	U	1308	G	1309	*	C	1318	G	1319	cSH	cWW	tHS	cWW
12	IL_8CRE_457	8CRE	0.0725	0	Minor groove platform	CM	SSU rRNA	C	1291	U	1292	G	1293	*	C	1302	G	1303	ncSW	cWW		cWW
13	IL_8GLP_263	8GLP	0.0000	0	Minor groove platform (H)	S2	SSU rRNA	C	1363	U	1364	G	1365	*	C	1374	G	1375	cSH	cWW	tHS	cWW
14	IL_8GLP_200	8GLP	0.2465	0		S2	SSU rRNA	A	339	C	340	C	341	*	G	123	U	124		cWW		cWW
15	IL_8GLP_246	8GLP	0.3476	0		S2	SSU rRNA	G	1108	C	1109	G	1110	*	C	1123	C	1124		cWW	ntHS	cWW
16	IL_9H3G_184	9H3G	0.2967	0		h1	SSU rRNA	A	520	C	521	A	522	*	U	534	U	535		cWW	ntHS	cWW
17	IL_9PN5_170	9PN5	0.3305	0		B5	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
18	IL_8CRE_420	8CRE	0.2933	0	Minor groove platform	CM	SSU rRNA	A	516	C	517	A	518	*	U	530	U	531		cWW		cWW
19	IL_8CRE_394	8CRE	0.1910	0	Minor groove platform	CM	SSU rRNA	C	50	A	51	U	52	*	A	426	G	427		cWW	tHS	cWW
20	IL_8GLP_192	8GLP	0.2074	0	Minor groove platform (H)	S2	SSU rRNA	C	49	A	50	U	51	*	A	476	G	477		cWW	tHS	cWW
21	IL_9H3G_159	9H3G	0.2245	0		h1	SSU rRNA	C	50	A	51	U	52	*	A	430	G	431		cWW	tHS	cWW
22	IL_9PN5_146	9PN5	0.2457	0		B5	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
23	IL_8B0X_004	8B0X	0.2583	0	Minor groove platform (H)	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
24	IL_4LFB_004	4LFB	0.2657	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
25	IL_4LFB_054	4LFB	0.2684	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
26	IL_4UYK_001	4UYK	0.2951	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
27	IL_9H3G_183	9H3G	0.3149	0		h1	SSU rRNA	U	535	A	536	A	537	*	U	519	A	520		cWW	tHS	ncWW
28	IL_9PN5_169	9PN5	0.3229	0		B5	SSU rRNA	U	533	A	534	A	535	*	U	517	A	518		cWW	tHS	ncWW
29	IL_8CRE_419	8CRE	0.3689	0	Minor groove platform	CM	SSU rRNA	U	531	A	532	A	533	*	U	515	A	516		cWW	tHS	ncWW
30	IL_8GLP_218	8GLP	0.2968	0		S2	SSU rRNA	A	545	G	546	G	547	*	C	537	U	538	cSH	cWW	ncWW	ncWW
31	IL_8B0X_063	8B0X	0.2957	0	Single bulged A (H)	A	SSU rRNA	U	1440	A	1441	G	1442	*	C	1460	G	1461		cWW		cWW
32	IL_6DLR_003	6DLR	0.2613	0	Minor groove platform	A	Guanidine-I riboswitch	C	39	U	40	G	41	*	C	21	G	22	cSH	cWW	tHS	cWW
33	IL_7MLW_004	7MLW	0.2757	0	Minor groove platform	F	Guanidine-I riboswitch	C	45	U	46	G	47	*	C	16	G	17	ncSH	cWW	tHS	cWW
34	IL_5T83_003	5T83	0.3221	0	Minor groove platform	A	Guanidine-I riboswitch	C	36	U	37	G	38	*	C	21	G	22	ncSH	cWW	ntHS	cWW
35	IL_8OI5_042	8OI5	0.2708	0	Minor groove platform (H)	1	LSU rRNA	U	1046	U	1047	U	1048	*	A	993	A	994	ncSH	cWW	ntHS	cWW
36	IL_9AXU_038	9AXU	0.3132	0	Minor groove platform (H)	2	LSU rRNA	U	1082	U	1083	U	1084	*	A	1029	A	1030	ncSH	cWW	ntHS	cWW
37	IL_9PN5_038	9PN5	0.2996	0		A1	LSU rRNA	U	1050	U	1051	PSU	1052	*	A	997	A	998	cSH	cWW	tHS	cWW
38	IL_9H3G_045	9H3G	0.3028	0		A	LSU rRNA	U	1060	U	1061	PSU	1062	*	A	1008	A	1009	ncSH	cWW	tHS	cWW
39	IL_8GLP_092	8GLP	0.3763	0		L5	LSU rRNA	A	2477	C	2478	G	2479	*	C	2499	U	2500		cWW		cWW
40	IL_9C75_001	9C75	0.3897	0	Minor groove platform	R	Rev Response Element	U	35	A	36	C	37	*	G	9	G	10		cWW	ntHS	cWW
41	IL_2QWY_009	2QWY	0.3139	0	Minor groove platform	C	SAM-II riboswitch	U	40	A	41	G	42	*	C	23	A	24		cWW	tHS	cWW
42	IL_5ML7_009	5ML7	0.2578	0	Minor groove platform	B	23S ribosomal RNA	C	2177	A	2178	G	2179	*	C	2201	G	2202		cWW	tHS	cWW
43	IL_6DTD_003	6DTD	0.3000	0	Minor groove platform	C	RNA (37-MER)	G	22	A	23	A	24	*	U	15	C	16	cSH	cWW	tHS	cWW
44	IL_1U6B_007	1U6B	0.3574	0	Minor groove platform	B	197-MER	G	128	A	129	G	130	*	C	177	C	178	cSH	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUG*CG	7
CAU*AG	6
ACA*UU	3
UAA*UA	3
UAG*CA	2
CAC*GG	2
UUU*AA	2
UU(PSU)*AA	2
UAAU*AG	1
UUUC*GG	1
UUUG*CG	1
UCAUC*GG	1
UCAGC*GG	1
UCUGU*GG	1
CCGG*CG	1
GAAG*CC	1
ACC*GU	1
GCG*CC	1
AGG*CU	1
UAG*CG	1
ACG*CU	1
UAC*GG	1
CAG*CG	1
GAA*UC	1
GAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	18
U*	11
C*	6
AA*	2
UU*	2
CAU*	1
CAG*	1
CUG*	1
CG*	1
G*	1

Release history

Release	4.10
Date	2026-05-20
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_41261.1 Version IL_41261.1 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_41261.1 Version IL_41261.1 of this group appears in releases 4.10 to 4.10

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Csv

Json