IL_1XNQ_048

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1XNQ|1|A|U|1257, 1XNQ|1|A|A|1280, 1XNQ|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_048 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.314

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

1XNQ|1|A|G|1255
1XNQ|1|A|A|1256
1XNQ|1|A|U|1257
1XNQ|1|A|G|1258
*
1XNQ|1|A|C|1277
1XNQ|1|A|U|1278
1XNQ|1|A|A|1279
1XNQ|1|A|A|1280
1XNQ|1|A|U|1281
1XNQ|1|A|C|1282

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein S3

Chain J

Ribosomal protein S10

Chain N

Ribosomal protein S14