IL_1XNQ_051

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_051 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0909

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

1XNQ|1|A|C|1303
1XNQ|1|A|G|1304
1XNQ|1|A|G|1305
1XNQ|1|A|A|1306
1XNQ|1|A|U|1307
1XNQ|1|A|U|1308
*
1XNQ|1|A|A|1329
1XNQ|1|A|U|1330
1XNQ|1|A|G|1331
1XNQ|1|A|A|1332
1XNQ|1|A|A|1333
1XNQ|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Ribosomal protein S13

Chain V

Ribosomal protein THX